Toettcher, Jared E., Joshua F. Apgar, Anya R. Castillo, Bruce Tidor, and Jacob K. White. 2011. “Recycling Circuit Simulation Techniques for Mass-Action Biochemical Kinetics”. In Advanced Simulation and Verification of Electronic and Biological Systems, 115-36. New York, NY: Springer Science & Business Media. Publisher’s Version: Recycling circuit simulation techniques for mass-action biochemical kinetics.

Toettcher, Jared E., Anya Castillo, Bruce Tidor, and Jacob K. White. 2011. “Biochemical Oscillator Sensitivity Analysis in the Presence of Conservation Constraints”. Proceedings of the 48th Design Automation Conference. San Diego, California: ACM. Publisher’s Version: Biochemical oscillator sensitivity analysis in the presence of conservation constraints.

Apgar, Joshua, Jared Toettcher, Drew Endy, Forest White, and Bruce Tidor. (2008) 2008. “Stimulus Design for Model Selection and Validation in Cell Signaling.”. PLoS Comput Biol 4 (2): e30. doi:10.1371/journal.pcbi.0040030.

Toettcher, Jared, Alexander Loewer, Gerard Ostheimer, Michael Yaffe, Bruce Tidor, and Galit Lahav. (2009) 2009. “Distinct Mechanisms Act in Concert to Mediate Cell Cycle Arrest.”. Proc Natl Acad Sci U S A 106 (3): 785-90. doi:10.1073/pnas.0806196106.